Database of Orthologous Promoters
Database overview

DoOP is a database of eukaryotic promoter sequences (upstream regions), aiming to facilitate the recognition of regulatory sites conserved between species. Based on the Arabidopsis thaliana and Homo sapiens genome annotation, we collected the orthologous promoter sequences from Viridiplantae and Chordata species.

You can search the database with sequences or text (annotation) to find promoter clusters of different genes. In addition to the sequence and annotation data, the positions of the conserved regions and transcription start sites can be viewed graphically.

The detailed description of the database can be found in the following article:

Endre Barta, Endre Sebestyén, Tamás B. Pálfy, Gábor Tóth, Csaba P. Ortutay, and László Patthy DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants Nucleic Acids Research, vol. 33, no. Database issue, pp. D86-D90, Jan. 2005

Database sections

The form below takes you to the search page of the selected version/section combination.

Motif search

In case you want to search in the conserved region collections of the database, please go to the DoOPSearch web server.

Created and maintained by Endre Sebestyén, Tibor Nagy & Endre Barta. 2007-2011, Agricultural Biotechnology Center