Database of Orthologous Promoters
License and download
Database of Orthologous Promoters and the DoOPSearch Web Server is licensed under a Creative Commons Attribution 3.0 Unported License. Creative Commons License

When using the data please cite one of the following articles:

Detailed description of the DoOP database can be found in this article:

Endre Barta, Endre Sebestyén, Tamás B. Pálfy, Gábor Tóth, Csaba P. Ortutay, and László Patthy DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants Nucleic Acids Research, vol. 33, no. Database issue, pp. D86-D90, Jan. 2005

Description of the DoOPSearch webserver can be found in this article:

Endre Sebestyén, Tibor Nagy, Sándor Suhai and Endre Barta DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes BMC Bioinformatics, vol. 10, no. Suppl 6, pp. S6, Jan. 2009

Most of the data, including older versions of the database, and the source code of the Bio::DOOP API and the MOFEXT software is available at the download page in archived format. The source code of the Bio::DOOP API and the MOFEXT software is also available at GitHub.

If you have any questions about the database, large scale analysis or bulk download, feel free to contact us at .

Created and maintained by Endre Sebestyén, Tibor Nagy & Endre Barta. 2007-2011, Agricultural Biotechnology Center